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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4544391_4551084_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4544391 - 4551084
Intron Length:
6694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTGGCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TATTTCTTGATT
Flanking Amino Acid:
PAQPAHPMVYSPPGSRWRDY
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.4
0.62
0.9
74.6
36.4
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
77.9
0.96
1
87.31
31.7

Associated Gene:

Gene:
PEX14
Ensembl Gene ID:
ENSAPLG00000006216
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006446
4491424 - 4558092
66669