About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4555018_4557933_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4555018 - 4557933
Intron Length:
2916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAAAC
5'SS Class:
major
3'SS Sequence:
TTCCATGTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGATCTTTACAC
Flanking Amino Acid:
ELTQELAASKATTSTNWILE
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
67.7
37.5
Major BPS
84
0.85
0.9
75
39.9
Major PPT
74.1
0.54
0.9
68.3
37.2
Minor 5ss
45.4
-0.5
2.7
60.5
44.2
Minor BPS
55.7
0.16
1.7
65.24
40.1

Associated Gene:

Gene:
PEX14
Ensembl Gene ID:
ENSAPLG00000006216
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006446
4491424 - 4558092
66669