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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4584957_4587859_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4584957 - 4587859
Intron Length:
2903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
CTTTCCTGTACT
Flanking Amino Acid:
FTKREECGRLGCKYNQVNSH
Intron Amino Acid Position:
1275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.8
38.7
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
83.1
0.74
0.9
77.3
37
Minor 5ss
34.3
-1.8
3.1
42
44.5
Minor BPS
66.6
0.6
1.8
85.14
41.1

Associated Gene:

Gene:
CASZ1
Ensembl Gene ID:
ENSAPLG00000006079
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044699
4574835 - 4620589
45755
ENSAPLT00000025729
4574835 - 4620470
45636
ENSAPLT00000006323
4574835 - 4620589
45755