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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4588032_4588561_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4588032 - 4588561
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAGAT
U12 Branch Point Sequence:
ATCTGCTTAAAG
Flanking Amino Acid:
YSLQCLCPNQHCEFRMRGHY
Intron Amino Acid Position:
1218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
66.6
0.41
1.1
62.9
43.3
Major PPT
74.4
0.55
0.8
66.2
35.8
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
56.5
0.07
2
62.9
44.8

Associated Gene:

Gene:
CASZ1
Ensembl Gene ID:
ENSAPLG00000006079
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025729
4574835 - 4620470
45636
ENSAPLT00000006323
4574835 - 4620589
45755
ENSAPLT00000044699
4574835 - 4620589
45755