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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4588761_4590280_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4588761 - 4590280
Intron Length:
1520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GGATGTATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
TTTGGATGTATT
Flanking Amino Acid:
VKPGFLQFQENDPCLATDCK
Intron Amino Acid Position:
1151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
66.2
0.37
1.1
55.2
48.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
40.9
-0.6
2.3
65.59
44.9

Associated Gene:

Gene:
CASZ1
Ensembl Gene ID:
ENSAPLG00000006079
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025729
4574835 - 4620470
45636
ENSAPLT00000006323
4574835 - 4620589
45755
ENSAPLT00000044699
4574835 - 4620589
45755