About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4590617_4590709_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4590617 - 4590709
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTTTGCAGA
5'SS Class:
weak_major
3'SS Sequence:
CATCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TGTATATAAATT
Flanking Amino Acid:
WKMYLRFHLSYFHFRTEGGA
Intron Amino Acid Position:
1047

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.03
1.2
49.1
41.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
85.4
0.8
0.8
80.2
31.4
Minor 5ss
43
-0.8
2.5
51.3
40.6
Minor BPS
48.7
-0
1.9
70.19
40.9

Associated Gene:

Gene:
CASZ1
Ensembl Gene ID:
ENSAPLG00000006079
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044699
4574835 - 4620589
45755
ENSAPLT00000025729
4574835 - 4620470
45636