About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4595532_4597884_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4595532 - 4597884
Intron Length:
2353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTGAT
U12 Branch Point Sequence:
CTGGGCTTGATG
Flanking Amino Acid:
SSLLSSLMNKMSKTSASLGN
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
66.1
0.4
1.3
59.3
47.1
Major PPT
81.3
0.7
0.9
72.8
42.2
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
46.5
-0.4
2
49.24
45.6

Associated Gene:

Gene:
CASZ1
Ensembl Gene ID:
ENSAPLG00000006079
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044699
4574835 - 4620589
45755
ENSAPLT00000025729
4574835 - 4620470
45636
ENSAPLT00000006323
4574835 - 4620589
45755