Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4597949_4598690_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4597949 - 4598690

Intron Length:

742

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGAGAT

5'SS Class:

major

3'SS Sequence:

TTGTGTGTTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTTAA

U12 Branch Point Sequence:

CACATCTTAACT

Flanking Amino Acid:

HSLDLSVKDHGNESNGHTVS

Intron Amino Acid Position:

964

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

71.2

34.6

Major BPS

73.4

0.58

0.9

63.7

35.1

Major PPT

0.63

69.2

46.1

Minor 5ss

26.2

-2.7

3.3

29.9

43.1

Minor BPS

66.6

0.6

1.4

73.25

43.6

Associated Gene:

Gene:

CASZ1

Ensembl Gene ID:

ENSAPLG00000006079

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044699

4574835 - 4620589

45755

ENSAPLT00000025729

4574835 - 4620470

45636

ENSAPLT00000006323

4574835 - 4620589

45755