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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4601090_4601803_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4601090 - 4601803
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAG
5'SS Class:
strong_major
3'SS Sequence:
AATGCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCCTCCTCAATG
Flanking Amino Acid:
YGQKTTHFHCRRPGCTFTFK
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
73.8
33
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
71.4
0.48
0.9
63
38.6
Minor 5ss
31.8
-2.1
3
37.5
47.2
Minor BPS
62.4
0.25
1.7
63.16
45.2

Associated Gene:

Gene:
CASZ1
Ensembl Gene ID:
ENSAPLG00000006079
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044699
4574835 - 4620589
45755
ENSAPLT00000025729
4574835 - 4620470
45636
ENSAPLT00000006323
4574835 - 4620589
45755