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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4601977_4604462_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4601977 - 4604462
Intron Length:
2486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCGCT
5'SS Class:
major
3'SS Sequence:
TTGCCTGGGGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATACTGATGACT
Flanking Amino Acid:
GKSTHYHCMQVGCNKVYTST
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
69.7
41.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
56.3
0.14
1.1
53.9
41.4
Minor 5ss
44.5
-0.6
3.3
65.7
45.4
Minor BPS
43.8
-0.4
2.2
64.3
39.7

Associated Gene:

Gene:
CASZ1
Ensembl Gene ID:
ENSAPLG00000006079
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044699
4574835 - 4620589
45755
ENSAPLT00000025729
4574835 - 4620470
45636
ENSAPLT00000006323
4574835 - 4620589
45755