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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4614171_4619616_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4614171 - 4619616
Intron Length:
5446

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCGGCGAGG
5'SS Class:
weak_major
3'SS Sequence:
TGGTTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAG
U12 Branch Point Sequence:
CCTGGCGTGACT
Flanking Amino Acid:
ASKDDAYRASGEASSLRDYA
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.3
46.5
42.3
Major BPS
49.1
-0
1.5
57.8
39
Major PPT
79.6
0.67
0.9
73.8
36.9
Minor 5ss
20.5
-3.4
4
29.7
43.5
Minor BPS
43.5
-0.4
2.5
62.04
48.4

Associated Gene:

Gene:
CASZ1
Ensembl Gene ID:
ENSAPLG00000006079
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044699
4574835 - 4620589
45755
ENSAPLT00000025729
4574835 - 4620470
45636
ENSAPLT00000006323
4574835 - 4620589
45755