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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4841407_4842440_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4841407 - 4842440
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
STFGEVLMVQVKKDIKTGHS
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
71.9
32.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80
0.68
0.8
79.2
33
Minor 5ss
38.6
-1.3
3.1
51.6
45.1
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
TARDBP
Ensembl Gene ID:
ENSAPLG00000006001
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006237
4840272 - 4844333
4062