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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4842582_4843263_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4842582 - 4843263
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCCA
5'SS Class:
major
3'SS Sequence:
CAATTCTCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTGTTAATT
Flanking Amino Acid:
WCDCKLPNSKQSPDEPLRSR
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
64.6
41.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.3
0.61
0.9
73.9
36.2
Minor 5ss
33.5
-1.9
3
43
43.7
Minor BPS
65.1
0.55
2
83.97
37.3

Associated Gene:

Gene:
TARDBP
Ensembl Gene ID:
ENSAPLG00000006001
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006237
4840272 - 4844333
4062