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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4843435_4843802_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4843435 - 4843802
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTATATTTAATT
Flanking Amino Acid:
FAFVTFADDQVAQSLCGEDL
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.2
0.79
0.7
81
30.9
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
66
0.58
1.5
77.42
39.4

Associated Gene:

Gene:
TARDBP
Ensembl Gene ID:
ENSAPLG00000006001
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006237
4840272 - 4844333
4062