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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4850245_4850718_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4850245 - 4850718
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTCAT
5'SS Class:
major
3'SS Sequence:
CTCTGAGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTCACT
Flanking Amino Acid:
PFYVMKANSNGKYICSDDGF
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
69.2
43.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.2
0.34
1.1
58.2
41.4
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
59.5
0.38
2
83.15
37.7

Associated Gene:

Gene:
MASP2
Ensembl Gene ID:
ENSAPLG00000006180
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006447
4848098 - 4862834
14737