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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4851640_4852714_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4851640 - 4852714
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
ACGCTTCTTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCATTCACG
Flanking Amino Acid:
SCDIGYVLLENENVVMSFIA
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.3
34.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
53.8
0.09
1.7
61.7
39.4
Minor 5ss
32.3
-2
3.4
39.2
41
Minor BPS
55.7
0.03
2.1
70.32
42.4

Associated Gene:

Gene:
MASP2
Ensembl Gene ID:
ENSAPLG00000006180
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006447
4848098 - 4862834
14737