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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4852834_4853361_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4852834 - 4853361
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GAATACTGATTG
Flanking Amino Acid:
TGWKMKYMAAGLPCPSPEAP
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74
38.4
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82.6
0.73
0.8
77.1
31.6
Minor 5ss
28.2
-2.5
2.8
32
42.7
Minor BPS
43.4
-0.6
1.8
44.69
40.7

Associated Gene:

Gene:
MASP2
Ensembl Gene ID:
ENSAPLG00000006180
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006447
4848098 - 4862834
14737