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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4853510_4854069_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4853510 - 4854069
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATCT
Flanking Amino Acid:
EVLCPYDVLQIKTPKKQFGP
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.1
0.68
0.7
78.3
28.8
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
58.6
0.35
2
80.3
41.9

Associated Gene:

Gene:
MASP2
Ensembl Gene ID:
ENSAPLG00000006180
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006447
4848098 - 4862834
14737