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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4854267_4860181_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4854267 - 4860181
Intron Length:
5915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TTTTCTGTTATT
Flanking Amino Acid:
TLHENKRTCTALCQNHFFTE
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
55.4
0.25
2.3
83.31
38.3

Associated Gene:

Gene:
MASP2
Ensembl Gene ID:
ENSAPLG00000006180
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006447
4848098 - 4862834
14737