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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4860314_4860562_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4860314 - 4860562
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
GGTTGTCTAATT
Flanking Amino Acid:
TGFEAFYAAEDVDECKQLFD
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
69.6
0.44
0.9
68.4
33
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
48.9
-0
2
69.97
41.3

Associated Gene:

Gene:
MASP2
Ensembl Gene ID:
ENSAPLG00000006180
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006447
4848098 - 4862834
14737