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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4860741_4862609_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4860741 - 4862609
Intron Length:
1869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
AGCTCTGAGATC
Flanking Amino Acid:
SYLCEYDYVKLSSGGKTLAT
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.7
32.2
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
35.2
-1.7
3.5
49.1
47.1
Minor BPS
40.7
-0.7
2.1
47.32
36.9

Associated Gene:

Gene:
MASP2
Ensembl Gene ID:
ENSAPLG00000006180
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006447
4848098 - 4862834
14737