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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4893636_4894464_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4893636 - 4894464
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
CTTTACTCACCT
Flanking Amino Acid:
VIITDSSDPMGPAESLFKES
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.9
35.3
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
77.8
0.63
0.8
71.9
32
Minor 5ss
35.9
-1.6
3.6
48.1
47.5
Minor BPS
52.9
0.17
2.1
77.18
45

Associated Gene:

Gene:
SRM
Ensembl Gene ID:
ENSAPLG00000006633
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006888
4891442 - 4896629
5188