About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4894619_4895807_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4894619 - 4895807
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGCTCATGATCT
Flanking Amino Acid:
ESVVQCEIDEDVIQVSKKYL
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
65.9
42.4
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
78
0.63
0.9
71.9
38
Minor 5ss
33.1
-1.9
3
40.6
45.6
Minor BPS
49.1
0.01
2
71.14
45.1

Associated Gene:

Gene:
SRM
Ensembl Gene ID:
ENSAPLG00000006633
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006888
4891442 - 4896629
5188