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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4896289_4896450_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4896289 - 4896450
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
CCGCTCTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCGAG
U12 Branch Point Sequence:
CGGTTCCGAGCG
Flanking Amino Acid:
SRYQEILVFRSTTYGNVLVL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
47.9
-0.1
1.7
52.1
45.2
Major PPT
64.7
0.33
1
56.6
38.7
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
40.2
-0.8
1.9
41.28
43

Associated Gene:

Gene:
SRM
Ensembl Gene ID:
ENSAPLG00000006633
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006888
4891442 - 4896629
5188