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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4898587_4899170_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4898587 - 4899170
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TCTTCTGTAACT
Flanking Amino Acid:
SMSYLAGKADRGSRHHWPKR
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
75.7
35.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
83.9
0.76
0.7
80.1
25.3
Minor 5ss
36.5
-1.5
2.9
49
47.2
Minor BPS
68.6
0.66
2
87.23
39

Associated Gene:

Gene:
EXOSC10
Ensembl Gene ID:
ENSAPLG00000006652
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006977
4898116 - 4912721
14606