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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4899248_4900450_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4899248 - 4900450
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGACA
5'SS Class:
major
3'SS Sequence:
TTTTTCCACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
DPAKQAYTGKKFAGANKLQQ
Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.8
39.7
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
81.7
0.71
0.8
77.4
30.3
Minor 5ss
30.8
-2.2
3.3
40.8
45.2
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
EXOSC10
Ensembl Gene ID:
ENSAPLG00000006652
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006977
4898116 - 4912721
14606