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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4902694_4903173_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4902694 - 4903173
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCCTA
5'SS Class:
major
3'SS Sequence:
TTTTTCATCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCA
Flanking Amino Acid:
KFDPSSKIYEISNRWKLMSQ
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
71.7
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
81.8
0.71
0.7
77.7
29.5
Minor 5ss
43.2
-0.7
3.1
56.8
41.8
Minor BPS
58.5
0.26
1.8
74.83
37.1

Associated Gene:

Gene:
EXOSC10
Ensembl Gene ID:
ENSAPLG00000006652
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006977
4898116 - 4912721
14606