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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4903249_4903932_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4903249 - 4903932
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATTC
5'SS Class:
major
3'SS Sequence:
TTCCTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTGTATTTAAAG
Flanking Amino Acid:
MESFENPFRMYLPSEQNPAY
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
71
33.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
88.2
0.86
0.6
83.5
24.9
Minor 5ss
42
-0.9
3.2
56
42.9
Minor BPS
52.8
-0
1.7
57.17
44.4

Associated Gene:

Gene:
EXOSC10
Ensembl Gene ID:
ENSAPLG00000006652
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006977
4898116 - 4912721
14606