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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4904748_4905309_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4904748 - 4905309
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGTTTGCAATG
Flanking Amino Acid:
KKRAPLSNPEKLENTLFGPH
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80
0.68
0.8
74
35.7
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
43.1
-0.6
2.1
48.67
40.1

Associated Gene:

Gene:
EXOSC10
Ensembl Gene ID:
ENSAPLG00000006652
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006977
4898116 - 4912721
14606