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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4906140_4906896_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4906140 - 4906896
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCT
Flanking Amino Acid:
MLLKIAEELPKEPQGIIACC
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.4
0.59
0.8
74
30.7
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
66.4
0.59
1.8
87.9
37.5

Associated Gene:

Gene:
EXOSC10
Ensembl Gene ID:
ENSAPLG00000006652
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006977
4898116 - 4912721
14606