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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4907705_4908390_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4907705 - 4908390
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ATTGGTGTAATT
Flanking Amino Acid:
KQYQLADWRIRPLPEEMIQY
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
78.5
35.6
Major BPS
66.1
0.4
1
73
31.5
Major PPT
80.2
0.68
0.8
72.8
37.5
Minor 5ss
36.6
-1.5
3
52
44.2
Minor BPS
45.8
-0.2
2.4
69.15
43

Associated Gene:

Gene:
EXOSC10
Ensembl Gene ID:
ENSAPLG00000006652
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006977
4898116 - 4912721
14606