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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4909560_4909697_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4909560 - 4909697
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGCC
5'SS Class:
major
3'SS Sequence:
TTTGCTCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCCTAATAATT
Flanking Amino Acid:
DGVLKKPEPQMYRPIKETPC
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
68.2
38.6
Major BPS
80
0.75
1
78.6
31
Major PPT
76
0.58
1
69.7
41.5
Minor 5ss
28.9
-2.4
3.1
36.3
40.7
Minor BPS
49
0.01
1.8
71.16
39.8

Associated Gene:

Gene:
EXOSC10
Ensembl Gene ID:
ENSAPLG00000006652
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006977
4898116 - 4912721
14606