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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4911636_4911947_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4911636 - 4911947
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TTCTGGAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
TTTTCTGGAATT
Flanking Amino Acid:
DSNDVILERVGILLDEAAGV
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
66.1
0.36
1
63.4
42
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
59
0.36
2.1
84.4
36.8

Associated Gene:

Gene:
EXOSC10
Ensembl Gene ID:
ENSAPLG00000006652
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006977
4898116 - 4912721
14606