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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4914745_4915314_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4914745 - 4915314
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTACAA
U12 Branch Point Sequence:
ATTACTACAATA
Flanking Amino Acid:
HENLCQCYIGWCPFW*
Intron Amino Acid Position:
2534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
52.2
0.06
1
61
34.9
Major PPT
85.8
0.81
0.7
85.6
29.2
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
48.6
-0.1
1.8
63.92
36.2

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004