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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4915421_4915899_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4915421 - 4915899
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
CTTAATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATACCTTAATT
Flanking Amino Acid:
IINRVRDKLTGRDFSHDETL
Intron Amino Acid Position:
2499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.5
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
78.1
0.63
0.9
71.9
37.7
Minor 5ss
37.7
-1.4
3
45.6
43.8
Minor BPS
75.2
0.87
1.3
82
39.5

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004