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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4916366_4917061_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4916366 - 4917061
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATCAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTATCAAAA
Flanking Amino Acid:
TDSYSASQSVEMLDSVELGE
Intron Amino Acid Position:
2445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
100
1.24
0.5
100
0
Major PPT
64.2
0.32
1.1
65.8
38.9
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
50.4
0.01
1.9
67.52
38

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004