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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4920938_4921617_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4920938 - 4921617
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGGT
5'SS Class:
major
3'SS Sequence:
TTCTTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CACTTCTTAATT
Flanking Amino Acid:
LNIEHRIMLRMAPDYDHLTL
Intron Amino Acid Position:
2260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.5
0.75
0.8
77.5
34.5
Minor 5ss
30.5
-2.2
3.6
38.1
46.8
Minor BPS
71.3
0.75
1.2
76.1
41.2

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004