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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4923371_4924019_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4923371 - 4924019
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGCA
5'SS Class:
major
3'SS Sequence:
ACCTCCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTCACCT
Flanking Amino Acid:
QTLKETSFNQAYGRDLMEAQ
Intron Amino Acid Position:
2062

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
63.3
34.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.1
0.48
0.8
62.4
34
Minor 5ss
36.9
-1.5
3.3
48.6
47
Minor BPS
54.8
0.23
1.8
76.21
40.7

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004