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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4928398_4929689_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4928398 - 4929689
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGCACC
5'SS Class:
major
3'SS Sequence:
TTTGCTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TTTTGCTTAACC
Flanking Amino Acid:
HKQELHKLMARCFLKLGEWQ
Intron Amino Acid Position:
1752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.4
61
44
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
73.1
0.52
1
67.3
42.8
Minor 5ss
36.5
-1.5
2.8
46.4
41.5
Minor BPS
81
0.95
1.7
90.55
30.7

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004