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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4933754_4935130_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4933754 - 4935130
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
ACAACACTAATG
Flanking Amino Acid:
IRQIWWERLQGCQRIVEDWQ
Intron Amino Acid Position:
1628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
87.4
0.84
0.7
80.6
31.5
Minor 5ss
36.8
-1.5
3.2
49.6
46.6
Minor BPS
43.7
-0.6
1.9
45.66
40.4

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004