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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4935696_4937056_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4935696 - 4937056
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTCCCTCAAAA
Flanking Amino Acid:
HQDLFSLAQQCIDKARDLLD
Intron Amino Acid Position:
1566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
85.3
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
45.8
-0.4
2.6
63
41.5
Minor BPS
60
0.31
1.7
70.84
40.8

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004