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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4937173_4938357_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4937173 - 4938357
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATGTAT
5'SS Class:
major
3'SS Sequence:
TGTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TGTTGCTGAGGA
Flanking Amino Acid:
RMAAAAAWGLGQWDSMEEYT
Intron Amino Acid Position:
1527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
73.6
32.8
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
80.1
0.68
0.9
73.8
36.9
Minor 5ss
33
-1.9
3.3
46.5
48.8
Minor BPS
44.4
-0.4
2.3
61.02
44.7

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004