About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4938459_4941125_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4938459 - 4941125
Intron Length:
2667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
GGATTCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTGATT
Flanking Amino Acid:
RMRCLEALGEWGQLHQQCCE
Intron Amino Acid Position:
1493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
60.5
44.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.7
0.42
0.9
66.1
40.6
Minor 5ss
28.8
-2.4
3.5
34.5
43.8
Minor BPS
59.9
0.39
1.9
85.4
34.5

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004