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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4952981_4954699_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4952981 - 4954699
Intron Length:
1719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CCGATTCAAGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
AGATTCTTACTT
Flanking Amino Acid:
AAQTVTQTSADAVYDCSSLY
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
66.1
45
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
55.9
0.13
1
51.9
36.9
Minor 5ss
31.8
-2.1
3.1
36.6
41.8
Minor BPS
59.2
0.37
1.6
71.48
39.7

Associated Gene:

Gene:
ANGPTL7
Ensembl Gene ID:
ENSAPLG00000008389
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008714
4952602 - 4957791
5190