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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4954801_4955135_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4954801 - 4955135
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
TAAGCACTACAT
Flanking Amino Acid:
DEFLGSPELEVFCDMETDGG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
76.3
0.59
0.8
68.9
37.1
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
39.8
-0.6
2.1
57.61
44.1

Associated Gene:

Gene:
ANGPTL7
Ensembl Gene ID:
ENSAPLG00000008389
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008714
4952602 - 4957791
5190