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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4960048_4961110_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4960048 - 4961110
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TCAGCCCTACCT
Flanking Amino Acid:
ALAQAYNPMARDLFNAAFVS
Intron Amino Acid Position:
1318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.1
60.2
41.1
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
36.8
-1.5
3.7
54.5
49.7
Minor BPS
48.7
-0
2.1
69.19
47.3

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004