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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4962207_4962895_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4962207 - 4962895
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTTGTAAACC
Flanking Amino Acid:
YDVLICRIVKGYTLADEEED
Intron Amino Acid Position:
1222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.1
0.65
0.8
74.3
34.7
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
49.9
-0
2.3
69.13
43

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004