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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4962989_4963243_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4962989 - 4963243
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCCCCTGTACA
Flanking Amino Acid:
SSLVFQLGKKYQIFIPMVNK
Intron Amino Acid Position:
1191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.1
0.61
0.9
71.7
32.8
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
56
0.18
1.8
70.04
41.6

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004