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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4963407_4963818_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4963407 - 4963818
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGACCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAGAA
U12 Branch Point Sequence:
TCTGCTCTGACC
Flanking Amino Acid:
DAPDVPVVARKAALETVDRL
Intron Amino Acid Position:
1136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
61.2
0.28
1
58.8
38.1
Major PPT
62.5
0.28
0.9
58.9
37
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
52.5
0.06
1.8
65.93
40.4

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004