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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4967530_4967872_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4967530 - 4967872
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTGATTAATT
Flanking Amino Acid:
TEQNQGTRREAIRVLGLLGA
Intron Amino Acid Position:
887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.8
0.74
0.9
83.9
31.1
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
60
0.39
2
80.74
41.5

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004